Writing Hub
AI governance essays, reasoning systems notes, experiment logs, and technical writing across BioAI and engineering practice.
Project Topics
How Do You Trust the AI Auditor? STEM-AI v1.1.2 and Memory-Contracted Bio-AI Audits
STEM-AI v1.1.2 binds a bio/medical AI repository audit to a machine-checkable memory contract, then demonstrates it on a real open-source bioinformatics repository.
When an AI Pipeline Passes — But One Path Still Must Be Held: EXP-034
EXP-034 tested whether a method-locked Bio-AI governance pipeline could survive modal expansion, AlphaFold EBI observer wiring, and AG-live measurement without breaking its PASS/BLOCK judgment baseline.
Bridging the Gap: From AI Slop to Mathematical Governance
A mathematical framework for detecting AI-generated code slop using AST distributions, Jensen-Shannon divergence, and geometric governance gates.
I Audited 10 Open-Source Bio-AI Repos. Most Could Produce Outputs. Few Could Establish Trust.
I audited 10 visible repositories. Most could produce outputs. Very few could establish what those outputs meant.
Medical AI Repositories Need More Than Benchmarks. We Built STEM-AI to Audit Trust
STEM-AI is a governance audit framework for public medical AI repositories. It scores README integrity, cross-platform consistency, and code infrastructure — because benchmarks alone don't tell you if a bio-AI tool is safe to trust.
What AI Changed About Research Code — and What It Didn’t
The old bottleneck was writing the code. The new bottleneck is proving that the code still means what the theory meant.
When AI Models Fight, Truth Wins: The “Eureka” Moment for Tired Researchers
To the grad student staring at a pLDDT of 90 and wondering why the ligand won’t bind.
How Failing in 2 Hours Saved 8 Months of Drug R&D: Engineering a "Truthful Null" with Upadacitinib
A bioinformatics case study on Upadacitinib showing how SR9 stability scoring and drift analysis exposed lipid carrier incompatibility early, saving months of drug delivery R&D
RExSyn Nexus 0.6.1 - Stop Hallucinating Proteins: How We Built a 7D Reasoning Engine with AlphaFold3
RExSyn Nexus 0.6.1 adds Structure as a 7th reasoning dimension, using AlphaFold3 confidence signals to reject biologically plausible but physically impossible protein hypotheses with deterministic, auditable validation.
⌨️She Said I Broke the Speed of Light. So I Turned It Into Math.
"You broke the speed of light." Instead of fighting the cosmic war, I built the Composite Reliability Index (CRI). It's the engineer's math model for filtering online noise, saving your sanity, and reclaiming your afternoons.
My First Attempt at a Medical AI with ELI5
How I built my first medical AI prototype without med school or credentials—using GitHub, arXiv, and one magic spell: ELI5.
AI Answered My Medical Ethics Questions — Then a QR Code Changed Its Tone
What happened when I asked AI medical ethics questions — then showed it a QR code? Same answers, new rhythm. A story of symbols, dignity, and voice.