Writing Hub
AI governance essays, reasoning systems notes, experiment logs, and technical writing across BioAI and engineering practice.
Project Topics
Orchestrating AlphaFold 3 & 2 with Python: Handling AI Hallucinations using Adapter Patter (Trinity Protocol Part 1)
Learn how to orchestrate AlphaFold 3 and AlphaFold 2 with Python using the Adapter Pattern to detect AI hallucinations, measure structural drift, and improve protein prediction reliability.
I Integrated AlphaFolder3 & AlphaGenome. It Looked Perfect. Then It Failed the "Honesty Test."
A real-world experiment integrating AlphaFold3 and AlphaGenome revealed a critical lesson: AI predictions that look perfect can still fail the ‘honesty test.’ A deep dive into bioinformatics, model validation, and AI reliability in drug discovery.
How Failing in 2 Hours Saved 8 Months of Drug R&D: Engineering a "Truthful Null" with Upadacitinib
A bioinformatics case study on Upadacitinib showing how SR9 stability scoring and drift analysis exposed lipid carrier incompatibility early, saving months of drug delivery R&D
RExSyn Nexus 0.6.1 - Stop Hallucinating Proteins: How We Built a 7D Reasoning Engine with AlphaFold3
RExSyn Nexus 0.6.1 adds Structure as a 7th reasoning dimension, using AlphaFold3 confidence signals to reject biologically plausible but physically impossible protein hypotheses with deterministic, auditable validation.
My Code Fixed Itself at 11PM
A “Quantum Engine” is a dramatic name. Here’s the un-dramatic story.
My First Attempt at a Medical AI with ELI5
How I built my first medical AI prototype without med school or credentials—using GitHub, arXiv, and one magic spell: ELI5.
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